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BITS2007 Meeting
BITS2007 Meeting



26-28 April 2007 Napoli, Italy

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oneChannelGUI: A Bioconductor graphical interface for single channel microarrays analysis.
 
Motivation
Bioconductor (www.bioconducotor.org) is an open source and open development software
project for the analysis and comprehension of genomic data. It is widely used by the
Bioinformatics community. However, since it is based on line command approach its
learning and usage is quite complex for persons not used to write their own code,
e.g. wet biologists. 
This package is intended to simplify the use of Bioconductor tools for beginners
having limited or no experience in writing R code.


Methods
oneChannelGUI is fully written in R and uses the TCL/TK graphical libraries.
oneChannelGUI extends the capabilities of the Graphical User Interface for Affymetrix
arrays analysis (affylmGUI) based on the limma microarray package. oneChannelGUI
package is available for windows and linux based operating sistems.


Results
oneChannelGUI package provides a graphical interface allowing QC, filtering,
statistical validation and data mining for single channel microarray platforms.
Affymetrix, Illumina and Applied Biosystem are supported. Furthermore, it allows
analysis of the new Affymetrix Exon arrays using gene/exon level probe set data,
generated with the Affymetrix Expression Console.
This package allows the user to perform, in a graphical environment, the analysis
pipe-line shown in figure 1 green box, without the need of writing any code.
 
Id: 100
Place: Napoli, Italy
Centro Congressi "Federico II"
Via Partenope 36
Napoli
Starting date:
-- not yet scheduled --   
Duration: 01h00'
Contribution type: Poster
Primary Authors: CALOGERO, Raffaele (Dip. Scienze Cliniche e Biologiche, Universita` di Torino (Italy))
Co-Authors: REMO, Sanges (CBM, AREA Science Park, Trieste (Italy))
FRANCESCA, Cordero (Dip. Informatica, Universita` di Torino (Italy))
Presenters: CALOGERO, Raffaele
 
Included in session: Poster Session
Included in track: Novel methodologies, algorithms and tools
 




bits2007_support@ceinge.unina.it | Last modified 08 July 2009 10:35 |




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